FlexLMM: a #Nextflowhttps://arxiv.org/abs/2410.01533https://github.com/birneylab/flexlmm
Summary: Linear mixed models are a commonly used statistical approach in genome-wide association studies when population structure is present. However, naive permutations to empirically estimate the…
Members, registration is still open for our upcoming workshops: Getting Started with Workflows for Bioinformatics, hosted by @SeqeraLabs on 10/17 and 10/18. Register today for Day 1 and Day 2 to secure your spot while they last! #nextflow#traininghttps://buff.ly/3Y28l9k
https://training.nextflow.io/hello_nextflow/ Session 1: Hello Nextflow Part 1-2 Session 2: Hello Nextflow Part 3-4
MAGFlow is a Nextflow pipeline for estimating the quality of MAGs through a wide variety of approaches (BUSCO, CheckM2, GUNC and QUAST), as well as for annotating taxonomically the metagenomes using GTDB-Tk2. https://github.com/jeffe107/MAGFlow
Introducing Nextflow with GA4GH TES: A New Era of Scalable Data Processing on Azure by Venkat Malladi https://techcommunity.microsoft.com/t5/healthcare-and-life-sciences/introducing-nextflow-with-ga4gh-tes-a-new-era-of-scalable-data/ba-p/4253160?utm_source=bluesky&utm_medium=social&utm_campaign=azu…
Learn how to use GA4GH TES API with Nextflow.
CIEVaD: Nextflow Workflow Collection for the Rapid and On-Demand Deployment of End-to-End Testing for Genomic Variant Detection https://www.mdpi.com/1999-4915/16/9/1444https://github.com/rki-mf1/cievad
Weekly recap: A new eQTL Nextflow workflow, spatial transcriptomics / scRNA-seq, guide assignment in CRISPR screens, on-/off-target analysis after CRISPR editing experiments, digital microbes, paleogenomics, ... blog.stephenturner.us/p/weekly-rec... 🧬🖥️
A new eQTL Nextflow workflow, spatial transcriptomics / scRNA-seq, guide assignment in CRISPR screens, on-/off-target analysis after CRISPR editing experiments, digital microbes, paleogenomics, ...
Enhancing the Polygenic Score Catalog with tools for score calculation and ancestry normalization https://www.nature.com/articles/s41588-024-01937-xhttps://rdcu.be/dVaF2#Nextflowhttps://github.com/PGScatalog/pgsc_calc 🧬🖥️
At the eQTL Catalogue, we have also developed a #Nextflowgithub.com/eQTL-Catalog...
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue - eQTL-Catalogue/qtlmap
Informing biologically relevant signal from spatial transcriptomic data https://www.biorxiv.org/content/10.1101/2024.09.09.610361v1?rss=1https://github.com/ismms-himc/visium_segmentation
