@adeflamingh.bsky.socialgithub.com/adeflamingh/.... The main software hasn't changed--alignments to MT and NUMT refs are used to find NUMT contamination. We mostly added some behind-the-scene checks when processing CIGAR strings and improved logs!

GitHub - adeflamingh/NuMt_parser: This repository is dedicated to code and associated metafiles for the NuMt_parser program (c) 2020 Angel G. Rivera-Colon & Alida de Flamingh

This repository is dedicated to code and associated metafiles for the NuMt_parser program (c) 2020 Angel G. Rivera-Colon & Alida de Flamingh - adeflamingh/NuMt_parser