stFormer: a foundation model for spatial transcriptomics www.biorxiv.org/content/10.1101/2024.09.27.615337v1
Here we present stFormer, a foundation model which incorporates ligand genes within spatial niches i
gLinDA: global differential abundance analysis ofmicrobiomes www.biorxiv.org/content/10.1101/2024.09.29.615668v1
Microbiome composition plays a significant role in various diseases, including cancer, obesity, infl
Plasmid conjugation drives within-patient plasmid diversity www.biorxiv.org/content/10.1101/2024.09.27.615342v1
Plasmids are well known vehicles of antimicrobial resistance (AMR) genes dissemination. Through conj
Identifying similar populations across independent single cell studies without data integration www.biorxiv.org/content/10.1101/2024.09.27.615367v1
Supervised and unsupervised methods have emerged to address the complexity of single cell data analy
In Silico identification and modelling of FDA-approved drugs targeting T-type calcium channels www.biorxiv.org/content/10.1101/2024.09.27.615366v1
Studies have shown that inhibition of the Cav3.1 T-type calcium channel can prevent or suppress neur
Benchmarking copy number aberrations inference tools using single-cell multi-omics datasets www.biorxiv.org/content/10.1101/2024.09.26.615284v1
Copy number aberrations (CNAs) are an important type of genomic variation which play a crucial role
EmbedSimScore: Advancing Protein Similarity Analysis with Structural and Contextual Embeddings www.biorxiv.org/content/10.1101/2024.09.26.615264v1
Accurately computing protein similarity is challenging due to the intricate interplay between local
Deep learning facilitates precise identification of disease-resistance genes in plants www.biorxiv.org/content/10.1101/2024.09.26.615248v1
The identification of plant disease-resistance genes is essential for understanding the plant immune
Molecular Evolution and Functional Divergence of Heterodisulfide Reductase A (HdrA) www.biorxiv.org/content/10.1101/2024.09.26.615249v1
Heterodisulfide reductase is a key enzyme in methanogenesis pathway in archaea, which helps to recyc
MetaLab Platform Enables Comprehensive DDA and DIA Metaproteomics Analysis www.biorxiv.org/content/10.1101/2024.09.27.615406v1
Metaproteomics studies the collective protein composition of complex microbial communities, providin