CC
Chase Clark
@chasingmicrobes.bsky.social
Current:
Computational postdoc @ UW Madison: (meta)genomics/"big data" knowledge graphs
Previously:
- Postdoc fellow in T15 Computation and Informatics in Biology and Medicine program @ UW Madison
- Predoctoral NIH F31 fellow @UIC
-Biochem/Micro R&D/M
261 followers441 following152 posts
I have a new preprint out on building large knowledge graphs for comparative genomics and natural product drug discovery #secmet
Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
For anyone, but especially, those without access to compute resources- I precalculated a SocialGene search for all 2,502 MIBig BGCs against all culture-collection-available organism genomes in RefSeq (>27,000) Those results are freely available here: bgcatlas.pages.dev
Awesome work!
CC
Chase Clark
@chasingmicrobes.bsky.social
Current:
Computational postdoc @ UW Madison: (meta)genomics/"big data" knowledge graphs
Previously:
- Postdoc fellow in T15 Computation and Informatics in Biology and Medicine program @ UW Madison
- Predoctoral NIH F31 fellow @UIC
-Biochem/Micro R&D/M
261 followers441 following152 posts