DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts
I quite like anvi'o, by Meren and colleagues, for microbial (meta)genome analyses and follow the anvi'o discord server where the team addresses user questions (invite link on https://anvio.org/). Recently a question came up asking details about how anvi'o handles kegg annotations. 2/8
The person asking the question had compared the KOfam annotation of their genome using anvi'o with kofamscan & microbeannotator (same DB version) and found that anvi'o annotated roughly 1900 genes in the genome, whereas the other two annotated ~700. Quite the difference! 3/8
DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts