DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts
It turns out that the anvi'o team (in this case Iva Veseli) has implemented a heuristic to find additional hits in case the default cutoffs of the hmms included in kofamscan database are too stringent. There's a second pass over the genes that fell just below the cutoff values 5/8
DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts