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Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna. Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
524 followers373 following49 posts
Reposted by Daan Speth
Ggraysky.app

likewise there’s no web version because if I were to make one it would just be a worse version of @deck.blue

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Reposted by Daan Speth
TLcontaminatedsci.bsky.social

Scientific writing tip: Don't remove content to fit a page or word limit. Remove words and phrases. You'll be surprised at how much you can cut, and your writing will probably get more interesting to read as a side effect.

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Reposted by Daan Speth
MKmkrupovic.bsky.social

A compendium of viruses from methanogenic #archaea reveals their diversity and adaptations to the gut environment - a fruitful collaboration with colleagues from Institut Pasteur, Sofia Medvedeva, Simonetta Gribaldo and Guillaume Borrel. www.nature.com/articles/s41...

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Reposted by Daan Speth
TLteralevin.bsky.social

My lab's first big research paper is now out in mBio! 🎉 We ask: how can Legionella antagonize other microbes with reactive oxygen species without hurting themselves? Answer: several dynamics seem to generate a 'toxic moat' of ROS around producers pubmed.ncbi.nlm.nih.gov/37728338/

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Reposted by Daan Speth
JMjmarsh.bsky.social

Awesome to see so many new arrivals! Reposting this to orient the microbiologists: The MicroSky feed is here: bsky.app/profile/did:...forms.gle/kiPC8vDKGDZV...bsky.app/profile/did:... Enjoy!

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DSdaanspeth.bsky.social

Sweet, i was wondering if there was a way to see people on the microsky feed list, to find people to follow. Thanks James!

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Reposted by Daan Speth
EFedanfoley.bsky.social

Because your timeline needs a fish gut doing an impersonation of the Loch Ness monster!

Fluorescence imaging of a zebrafish gut prepared by Mckenna Eklund.
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Reposted by Daan Speth
AWamandatron89.bsky.social
Reposted by Daan Speth
RPrhyshparry.bsky.social

A lack of reliable structural protein predictions has hindered benchmarking structure-based phylogenetic inferences compared to sequence-only models. Here Moi et al., describe FoldTree showing that structure-based trees can outperform sequence-based trees (sometimes). www.biorxiv.org/content/10.1...

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DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna. Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
524 followers373 following49 posts