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Dr Emma Hodcroft
@firefoxx66.bsky.social
Die Virenjägerin! 🏹🧬! Using programming & phylogenetics, I study & track viruses. Co-developer of Nextstrain, based at Swiss TPH & Uni Basel. Founder of the orig SC2 variant-tracking website, CoVariants.org I like 🐈 & 🛫 Twitter @firefoxx66
3.3k followers126 following128 posts
DEfirefoxx66.bsky.social

Quite impressive to see how quickly 23I (BA.2.86 including JN.1 - shown here in light blue) has come to dominate globally, even across areas that had slightly different previous mixes of variants. 🌎 (Charts from #CoVariantscovariants.org/per-country) 1/4

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AWamandatron89.bsky.social

Do we know if the lateral flow tests are picking up newer variants? There have been a lot of covid like illnesses going around work that are apparently coming up negative on lat flow, but I am wondering if that's just a bunch of false negatives.

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DEfirefoxx66.bsky.social

As you might remember, 23I was another significant evolutionary jump (like the initial Omicron was before it), splitting off distinctly from previous Omicron variants. 🔭 (Image labelled from the SARS-CoV-2 @nextstrain Omicron tree) 2/4

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IMmackayim.bsky.social

Have there been examples anywhere of a past variant reappearing and spreading in decent numbers or always replacement by something antigenically (?epitopically?) distinct?

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KPkyhwana.org

Yeah, BA2.86->JN.1 has taken over New Zealand's wastewater:

Graph showing covid variants in wastewater in NZ, JN.1 has dominated all of February
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DE
Dr Emma Hodcroft
@firefoxx66.bsky.social
Die Virenjägerin! 🏹🧬! Using programming & phylogenetics, I study & track viruses. Co-developer of Nextstrain, based at Swiss TPH & Uni Basel. Founder of the orig SC2 variant-tracking website, CoVariants.org I like 🐈 & 🛫 Twitter @firefoxx66
3.3k followers126 following128 posts