Reviewer 2 does not agree with the experimental plan @gingermicrobe.bsky.social and I came up with this morning… 🤨
We take the previously published Rend-seq data sets that allow mapping of 5' and 3' transcript boundaries and globally apply our new tool pyRAP that can be found here github.com/ALawaetz/pyRAP Data can be loaded into J browse following the instructions at the bottom of this page.
A pipeline to annotate Rend-seq data genome-wide. Contribute to ALawaetz/pyRAP development by creating an account on GitHub.
Want a delve down a rabbit hole? Check out our new paper www.microbiologyresearch.org/content/jour... Genome-wide annotation of transcript boundaries using bacterial Rend-seq datasets B. subtilis, E. coli and S. aureus genomes available.
Our new data on Staph type VII systems and the bacterial cell envelope
The staphylococcal type VII secretion system impacts daptomycin sensitivity through controlling bacterial cell envelope integrity https://www.biorxiv.org/content/10.1101/2023.11.20.567842v1
The Staphylococcus aureus type VII secretion system (T7SS) plays an important role in bacterial viru
Selection of a de novo gene that can promote survival of Escherichia coli by modulating protein homeostasis pathways www.nature.com/articles/s41... Wow!!! 🧬🧫
Genes for highly abundant proteins in Escherichia coli avoid 5’ codons that promote ribosomal initiation - this was an undergrad final year project!!!! She's currently looking for a PhD...... journals.plos.org/ploscompbiol...
It’s so bad 🤣
Thank you!! It looks great!! 🧫