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Nicky Whiffin
@nickywhiffin.bsky.social
Associate Professor & Henry Dale Fellow, Big Data Institute 2024 Lister Institute Fellow Computational Genomics | All things non-coding | Rare Disease
237 followers123 following51 posts
NWnickywhiffin.bsky.social

I totally have to read this!! Very relatable as 3 of the 4 fit with my own experience - aphantasia (no mental imagery, or indeed sounds, or smells etc.), face blindness, and severely deficient autobiographical memory (SDAM) Brains are fascinating! Sometimes I wonder how mine functions at all...

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NWnickywhiffin.bsky.social

The key problem with replying to emails is that people then reply to your emails ๐Ÿ™ˆ

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NWnickywhiffin.bsky.social

Super excited to have this out! ๐Ÿฅณ We identify RNU4-2 as a new neurodevelopmental disorder (NDD) gene. We estimate that variants in an 18 bp region of this non-coding RNA explain ~0.4% of all individuals with NDD ๐Ÿ˜ฎ Led by a super talented DPhil student Yuyang Chen ๐ŸŒŸ ๐Ÿงฌ๐Ÿ–ฅ๏ธ

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Reposted by Nicky Whiffin
KSksamocha.bsky.social

Some updated guidance on our gnomAD v4 constraint scores: gnomad.broadinstitute.org/news/2024-03...@gnomad-project.bsky.social team is hard at work on v4.1 and improvements across the board, so expect more updates. Thanks to Katherine Chao for spearheading this blogpost.

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Reposted by Nicky Whiffin
TLtuuliel.bsky.social

We know the importance of subtle gene dosage variation; yet much of molbio is based on gene KO/KD. In our new preprint, our (ex-) postdoc Julia Domingo introduced subtle modulations of transcription factor dosage by CRISPRi/a, and quantified responses by scRNA-seq. 1/ www.biorxiv.org/content/10.1...

Non-linear transcriptional responses to gradual modulation of transcription factor dosage
Non-linear transcriptional responses to gradual modulation of transcription factor dosage

bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution

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NWnickywhiffin.bsky.social

Currently trying to decide whether Chrome crashing and refusing to restore my >150 tabs is a complete disaster or absolutely amazing... ๐Ÿค”๐Ÿ˜ฑ

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Reposted by Nicky Whiffin
HThtanudisastro.bsky.social

Our review article, with Ira Deveson, @hdashnow.bsky.social@dgmacarthur.bsky.social, on sequencing & characterising short tandem repeats is out in @NatRevGen! We delve into short read & long read STR genotyping tools and applications in rare disease & population genetics ๐Ÿงฌgo.nature.com/48pWZix

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NWnickywhiffin.bsky.social

Yesterday I had the immense pleasure of being on the examination committee at a public thesis defense. I came away feeling sad that we don't do these in the UK - we don't publicly celebrate the immense amount of work that goes into a PhD with everything instead happening behind closed doors ๐Ÿ˜”

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NWnickywhiffin.bsky.social

Sunday afternoon spent reviewing ESHG abstracts ๐Ÿงฌ๐Ÿค“ while on my favourite form of transport, the Eurostar ๐Ÿš„. Brussels and Ghent here I come!

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NWnickywhiffin.bsky.social

Musing on the ideal length of a cycle commute... long enough for some deep thinking time but not too long that you spend 75% of it itching for access to the internet to research your new idea ๐Ÿšดโ€โ™€๏ธ Picture of beautiful sunset on cycle home last week โค๏ธ

Bridge over a river at sunset. Sky and water reflection in blue and purple shades
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Nicky Whiffin
@nickywhiffin.bsky.social
Associate Professor & Henry Dale Fellow, Big Data Institute 2024 Lister Institute Fellow Computational Genomics | All things non-coding | Rare Disease
237 followers123 following51 posts