ZI
Zamin Iqbal
@zaminiqbal.bsky.social
Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility
1k followers791 following213 posts
Martin Hunt has made Incremental release 2024-08 on AllTheBacteria - adds 507k assemblies taking us up to 2.44 million in total: github.com/AllTheBacter...allthebacteria.readthedocs.io/en/latest/in... 1/n
Gene annotation with bakta is well underway; AMRFinder+ results coming out soon; MLST has been run on many major species; DefenseFinder being run on everything. LexicMap now enables anyone to align to the whole thing in seconds with 1-2Gb RAM(provided you have a few Tb of disk for the index) 2/n
ZI
Zamin Iqbal
@zaminiqbal.bsky.social
Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility
1k followers791 following213 posts