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Amelia Barber
@ameliabarberphd.bsky.social
Junior group leader at the University of Jena. Fungal pathoecology, antimicrobial resistance, and genome stuff. Always up for an adventure or bike ride. barber-lab.com
187 followers186 following25 posts

Microbiome twitter, we are looking for negative control samples from as many sources and kits as possible. If you've included blanks in your 16S or ITS amplicon seq project and the data is publicly available, drop a link in the thread! RTs appreciated!

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DAdeniseakob.bsky.social

We have several extraction blanks sequenced and in NCBI. I’ll look for links

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KMdnakendra.bsky.social

Neg controls from extractions right? Mine aren't public but I'd be open to talking about your plans and sharing. Mars at uconn.edu

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PCuncultured.carinilab.com

Pretty sure we did ITS and 16s blanks from the moBio HT kits: journals.asm.org/doi/10.1128/...

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JMlebetimonas.bsky.social

Bioproject PRJNA521988 has 3 negative controls called "BLANK"; the publication is linked to the Bioproject. There is also 1 "BLANK" in PRJNA641080; paper in press at AEM. I also have several others for projects in the works that I will be depositing by the end of the year. What's your timing?

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GZgeoffzahn.bsky.social

www.ncbi.nlm.nih.gov/sra?linkname... The last 3 samples, labeled "blank"

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RAroeyangel.bsky.social

We routinely include NTC, extraction blanks, and mock communities in our sequencing plates, e.g.: soil.copernicus.org/articles/9/2...soil.copernicus.org/articles/8/1...bg.copernicus.org/articles/18/...bg.copernicus.org/articles/16/...

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AB
Amelia Barber
@ameliabarberphd.bsky.social
Junior group leader at the University of Jena. Fungal pathoecology, antimicrobial resistance, and genome stuff. Always up for an adventure or bike ride. barber-lab.com
187 followers186 following25 posts