DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts
And of course, the addiitonal annotations are a nice feature of anvi'o, alhough it should be said that kofamscan also includes a "--threshold-scale" parameter allowing the user to modfiy the threshold there as well, although i think the anvio heuristic is more elegant. 8/8
Thanks for sharing! I'm running anvi-run-kegg-kofams right now on a bunch of archaea so it's good to know I can expect more hits this way.
DS
Daan Speth
@daanspeth.bsky.social
Microbiologist and bioinformatician. Senior scientist at CMESS, University of Vienna.
Microbial ecology, mostly of nitrogen cycle and methane cycle microbes. Also geobiology, a side of obligate endosymbionts, and large scale protein family analyses
525 followers373 following49 posts