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Luke Pilling
@lcpilling.bsky.social
PhD. Genetic epidemiologist researching disease mechanisms @ University of Exeter, UK ❤Rstats. UCU rep✊. Views my own. He/him. 🏳️‍🌈ally. 🇬🇧🇪🇺. 📷 ShowYourStripes.info W: ex.ac.uk/lcpilling
135 followers153 following31 posts
LPlcpilling.bsky.social

Once in a JupyterLab environment on a Spark Cluster the following R commands pull the data straight from the database without intermediate files Takes ~5 minutes to build all the package dependencies, and <5 minutes to get the data object

R syntax to use ukbrapR::get_rap_phenos
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LP
Luke Pilling
@lcpilling.bsky.social
PhD. Genetic epidemiologist researching disease mechanisms @ University of Exeter, UK ❤Rstats. UCU rep✊. Views my own. He/him. 🏳️‍🌈ally. 🇬🇧🇪🇺. 📷 ShowYourStripes.info W: ex.ac.uk/lcpilling
135 followers153 following31 posts