Yes. CLI (docs.quantms.org/en/latest/). Four steps: - Install docker in your Machine. - Install nexflow in your machine. - Create a proper SDRF for your experiment. - Run the experiment.

But I want to be clear about something while you can run #quantms in your PC, it is mainly desing for cloud and HPC and really large datasets. For PC analyses you can run DIANN or OpenMS, or SAGE and is better I guess.