Talks and posters for CSHL Biology of Genomes are now available. See you all in a few weeks! #bog24meetings.cshl.edu/abstracts.as...
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
I am delighted to share a preprint of our *Guide to k-mer approaches for genomics across the tree of life* By Katie Jenike, Lucia Campos-Domínguez, Marilou Boddé, José Cerca, Christina N. Hodson, @mikeschatz.bsky.socialarxiv.org/abs/2404.01519
The foundation has enabled numerous students to attend key conferences in Genomics and Data Science. Help us to continue this mission by donating to the foundation: jxtxfoundation.org/donate/
Today (April 2nd) marks four years since the untimely passing of James Taylor, Professor of Biology and Computer Science at JHU and one of the founders of @galaxyproject.bsky.social@jxtxfoundation.bsky.socialjxtxfoundation.org).
James P. Taylor Foundation for Open Science.
10 years on, @bkille.bsky.social@treangen.bsky.social and co. have refreshed Parsnp with a version 2! Build a core genome multi-alignment for 100k SARS genomes or 1k Mtb genomes in under an hour 💨
Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets https://www.biorxiv.org/content/10.1101/2024.01.30.577458v1
Motivation: Since 2016, the number of microbial species with available reference genomes in NCBI has
Does that come with a side of baked potato?
Applications due this Friday for @jxtxfoundation.bsky.social@cshlaboratory.bsky.socialjxtxfoundation.org/news/2023-11...
I’m so proud of this work! Awesome collaboration between the Galaxy Project and the Vertebrate Genomes Project to make reference quality genomes accessible for all. 51 (!!!) new vertebrate genomes presented here means only about 70,000 left to go😀🚀 rdcu.be/dwYSO
Genome assembly is difficult, but we reduce some of the mystery and barriers to entry (both w.r.t. knowledge and compute resources) by implementing our pipeline in Galaxy: www.nature.com/articles/s41...@mikeschatz.bsky.social@aphillippy.bsky.social@arhie.bsky.social
Nature Biotechnology - Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
Also see me tomorrow/Friday @ 1:30pm (T&C C) in the USDA/GTEx workshop discussing how AnVIL can be used to promote fast collaborative data-intensive research at any scale. plan.core-apps.com/pag_2024/eve...