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TWtobiaswarnecke.bsky.social

We focused on peptidoglycan hydrolases, enzymes that cleave peptidoglycan. Archaea don’t have peptidoglycan (some methanogens have something similar but different, called pseudomurein). So they should have no cell-intrinsic use for peptidoglycan hydrolases, right? 6/10

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DKmetaomicsnerd.bsky.social

Getting back to protozoa, methanogens have a weirder relationship with them. Methanogens can stick on the outside of protozoa, sure. But methanogens also often live INSIDE protozoa. 12/?

Figures 1-4 from Finlay et al. 1994, Microbiology Letters 117(2): 157-161. Caption: Transmission electron micrographs. Figure 1: Dasytricha ruminantium. The small electron-dense bodies in the ciliate's cytoplasm are the methanogens; the large circular body is the macronucleus of the ciliate, and there is a circumferential ring of hydrogenosomes; scale bar represents 2 micrometers. Figure 2. The two morphotypes of methanogens found in D. ruminantium. Scale bar represents 2 micrometers. Figure 3. Methanogens (electron-dense bodies) in Entodinium species. They appear similar to those in D. ruminantium. Figure 4. Higher magnification of the two morphotypes of symbiotic methanogens found in both types of rumen ciliate. Scale bar represents 1 micrometer.
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DKmetaomicsnerd.bsky.social

Methanogens have evolved a couple of really weird ways to make sure they acquire hydrogen. The first, which is a bit more broadly applied, is the use of adhesin-like proteins (ALPs) to stick onto the surfaces of hydrogen producers. This is a strategy they employ with fungi. 11/?

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DKmetaomicsnerd.bsky.social

This energy, of course, comes in the form of fermentation products of sugar, which comes from plants, which eat the sun. So methanogens have to get by with a little help from their friends, in the rumen. In academic terms, we call this syntrophy. 10/?

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DKmetaomicsnerd.bsky.social

Protozoa, much like fungi, have close relationships with methanogens in the rumen. Methanogens, as you remember, are the archaea in the rumen and the producers of methane, which comes out in the burps that are killing us all. 8/?

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Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome Nice paper isolating methanogens using syntrophic bacteria. Also turns out you can screen human breath for methane to identify people with more gut methanogens! www.nature.com/articles/s41...

Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome - Nature Communications
Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome - Nature Communications

Here, the authors present a new method for isolating methanogenic archaea from human fecal samples and establish stable archaeal cultures yielding nine previously uncultivated strains, which upon furt...

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DKmetaomicsnerd.bsky.social

The main challenge in methane emissions reduction is how to reduce rumen acidity. When methanogens are inhibited, most hydrogen leaves the rumen, but some of it stays behind. We're working on how to direct it into organic acids that the cow absorbs - that's the current research frontier. 12/12

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DKmetaomicsnerd.bsky.social

Enter the methanogens! Most methanogens in the rumen are hydrogenotrophic methanogens, which means they reduce CO2 to methane using hydrogen or formate. This takes up all the excess hydrogen and formate. Methane doesn't go into solution, but instead leaves the animal. 11/?

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