Benchmarks on DNA extraction methods for long-read #metagenomicdoi.org/10.1099/acmi...
Metagenomics has been transformative in our understanding of the diversity and function of soil microbial communities. Applying long read sequencing to whole genome shotgun metagenomics has the potent...
Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing www.nature.com/articles/s41...github.com/katerinakaza...
This work presents Strainy, a long-read metagenome assembler that allows the identification of strain distributions and mutational patterns in environmental metagenomes.
If you study an endangered vertebrate species and plan on sequencing their #genome#PacBio#herpetology#reptiles#amphibiansprograms.pacb.com/l/1652/2024-...
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur (https://github.com/treangenlab/lemurhttps://github.com/treangenlab/magnethttps://www.biorxiv.org/content/10.1101/2024.06.01.596961v2 🧬🖥️
Solving genomic puzzles: computational methods for metagenomic binning Want to know more about finding #phage#bacteria#metagenomesacademic.oup.com/bib/article/...
Abstract. Metagenomics involves the study of genetic material obtained directly from communities of microorganisms living in natural environments. The fiel
Interesting #metagenomicdoi.org/10.1186/s401...
Background Single amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) are the predominant sources of information about the coding potential of uncultured microbial lineages, but their str...
This 2020 paper on the cancer microbiome from Rob Knight's group has been retracted: www.nature.com/articles/s41...x.com/matthewherpe..., the authors agreed to the retraction, glad to hear they did so! There's still a *lot* of interesting stuff to grapple with here largely left unsaid 1/n
Microbial nucleic acids are detected in samples of tissues and blood from more than 10,000 patients with cancer, and machine learning is used to show that these can be used to discriminate between and...
Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet www.biorxiv.org/content/10.1...github.com/treangenlab/...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution